Revisiting the Ramachandran plot from a new angle.

نویسندگان

  • Alice Qinhua Zhou
  • Corey S O'Hern
  • Lynne Regan
چکیده

The pioneering work of Ramachandran and colleagues emphasized the dominance of steric constraints in specifying the structure of polypeptides. The ubiquitous Ramachandran plot of backbone dihedral angles (ϕ and ψ) defined the allowed regions of conformational space. These predictions were subsequently confirmed in proteins of known structure. Ramachandran and colleagues also investigated the influence of the backbone angle τ on the distribution of allowed ϕ/ψ combinations. The "bridge region" (ϕ ≤ 0° and -20° ≤ ψ ≤ 40°) was predicted to be particularly sensitive to the value of τ. Here we present an analysis of the distribution of ϕ/ψ angles in 850 non-homologous proteins whose structures are known to a resolution of 1.7 Å or less and sidechain B-factor less than 30 Ų. We show that the distribution of ϕ/ψ angles for all 87,000 residues in these proteins shows the same dependence on τ as predicted by Ramachandran and colleagues. Our results are important because they make clear that steric constraints alone are sufficient to explain the backbone dihedral angle distributions observed in proteins. Contrary to recent suggestions, no additional energetic contributions, such as hydrogen bonding, need be invoked.

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Comment on "Revisiting the Ramachandran plot from a new angle".

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عنوان ژورنال:
  • Protein science : a publication of the Protein Society

دوره 20 7  شماره 

صفحات  -

تاریخ انتشار 2011